{"id":963,"date":"2026-02-09T15:55:10","date_gmt":"2026-02-09T14:55:10","guid":{"rendered":"https:\/\/marbefes.lifewatch.eu\/?post_type=project&#038;p=963"},"modified":"2026-03-03T15:25:58","modified_gmt":"2026-03-03T14:25:58","slug":"56-ecological-ecosem","status":"publish","type":"project","link":"https:\/\/marbefes.lifewatch.eu\/index.php\/project\/56-ecological-ecosem\/","title":{"rendered":"56- Ecological &#8211; EcoSEM"},"content":{"rendered":"<p>[et_pb_section fb_built=&#8221;1&#8243; _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; custom_margin=&#8221;-51px|||||&#8221; custom_padding=&#8221;0px|||||&#8221; global_colors_info=&#8221;{}&#8221;][et_pb_row column_structure=&#8221;1_2,1_2&#8243; _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;][et_pb_column type=&#8221;1_2&#8243; _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;][et_pb_gallery gallery_ids=&#8221;850&#8243; fullwidth=&#8221;on&#8221; _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; border_width_all=&#8221;4px&#8221; global_colors_info=&#8221;{}&#8221;][\/et_pb_gallery][et_pb_tabs _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;][et_pb_tab title=&#8221;Tools details&#8221; _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;]<\/p>\n<ul>\n<li><strong><span>Category:<\/span><\/strong><\/li>\n<li><strong><span>Subcategory:<\/span><\/strong><\/li>\n<li><strong><span>Tool Type\u00a0:<\/span><\/strong><\/li>\n<li><strong><span>Input data:<\/span><\/strong><\/li>\n<li><strong><span>Output:<\/span><\/strong><\/li>\n<li><strong><span>Target users:<\/span><\/strong><\/li>\n<li><strong><span>Location tested:\u00a0<\/span><\/strong><\/li>\n<li><strong><span>Level of uncertainty:<\/span><\/strong><\/li>\n<\/ul>\n<p>[\/et_pb_tab][et_pb_tab title=&#8221;Technical details&#8221; _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;]<\/p>\n<ul>\n<li><strong>Version<\/strong>:\u00a0Not sure it\u2019s necessary<\/li>\n<li><strong>Publication<\/strong>: Example published before, not MARBEFES specific<\/li>\n<li><strong>Rights<\/strong>:\u00a0No rights<\/li>\n<li><strong>Difficulty level of implementation<\/strong>: Complex<\/li>\n<li><strong>Skill required (for method use)<\/strong>: The design of the Causal Path Diagram requires no specific data as it is entirely conceptual. However, knowledge of or close consultation with experts is essential to consider all possible interactions of descriptors for a given ecosystem service. Parameterisation and running of SEM requires expertise in the approach and knowledge in a coding environment (e.g., R).<\/li>\n<\/ul>\n<p>[\/et_pb_tab][et_pb_tab title=&#8221;Developer information&#8221; _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;]<\/p>\n<ul>\n<li><strong>Authors<\/strong>: Clement Garcia<\/li>\n<li><strong>Tool contributors<\/strong>: Clement Garcia, David Clare (Cefas), Tiina Salo (Abo Akademy)<\/li>\n<li><strong>Project general coordinator<\/strong>: Jan Marcin W\u0119s\u0142awski<\/li>\n<li><strong>Project Scientific manager<\/strong>:\u00a0Julie Bremner<\/li>\n<li><strong>Project manager<\/strong>:\u00a0Gary Saggers (Cefas), Joanna Piwowarczyk (IOPAN)<\/li>\n<\/ul>\n<p>[\/et_pb_tab][et_pb_tab title=&#8221;Citation&#8221; _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;]<\/p>\n<ul>\n<li><span>Fan et al. (2016). Applications of structural equation modelling (SEM) in ecological studies: an updated review. Ecological Processes, 5.<\/span><\/li>\n<li><span>Grace et al. (2010). On the specification of structural equation models for ecological systems. Ecological Monographs 80:67\u201387.<\/span><\/li>\n<li><span>Lefcheck (2016). PiecewiseSEM: Piecewise structural equation modelling in r for ecology, evolution, and systematics. Methods in Ecology and Evolution 7:573\u2013579.<\/span><\/li>\n<li>Vald\u00e9s et al. (2020) High ecosystem service delivery potential of small woodlands in agricultural landscapes. Journal of Applied Ecology 57:4\u201316<\/li>\n<\/ul>\n<p>[\/et_pb_tab][et_pb_tab title=&#8221;Contact&#8221; _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;]<\/p>\n<ul>\n<li><strong>Name<\/strong>: Clement Garcia\u00a0<\/li>\n<li><strong>Organization<\/strong>: Cefas<\/li>\n<li><strong>Email<\/strong>: clement.garcia@cefas.gov.uk<\/li>\n<\/ul>\n<p>[\/et_pb_tab][\/et_pb_tabs][\/et_pb_column][et_pb_column type=&#8221;1_2&#8243; _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;][et_pb_text _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;]<\/p>\n<h3><strong>Modelling Ecosystem Service Dynamics Using Structural Equation Modelling<\/strong> &#8211; EcoSEM<\/h3>\n<p>This tool is based on two main principles: a causal path diagram and a Structural Equation Model (SEM) framework. The development of causal path analysis allows for the visual representation of the different cause-and-effect relationships among the environmental components from which ecosystem function and services emerge. They simplify the system by mapping how variables influence one another (e.g., seabed type -&gt; oxygen regime -&gt; carbon recycling &amp; storage -&gt; climate regulation) and help identify direct, indirect and feedback effects that are difficult to detect. These diagrams rely on available information and first principles and represent testable hypotheses that can then be verified with available data using the SEM framework. SEM is a quantitative framework able to quantify and partition the relative direct and indirect pathways between multiple processes within a system. Some forms of the SEM approach consist of multiple sub-models within a global model, which allows for testing of direct and indirect effects within a causal path diagram to tease out the mechanisms driving ecosystem functioning and service provisioning. Once the causal path diagram is defined and the appropriate data formatted, the SEM models are fitted after checking for collinearity. The are refined and simplified iteratively, where necessary, until the model is determined to be an adequate representation of the data (determined by a statistical test). Pathways can be modified (added or removed) to fit the data better whilst retaining ecological realism. Equally statistically valid alternative models are compared, and the recurring parameters and consistent pathways are highlighted. Typical output represents a network of interactions going from the left (descriptors = environmental features) to the right (ecosystem function and services), positive (black) and negative (red) relationships are represented alongside the magnitude of effect (arrow thickness) and significance (stars). The tool is data greedy, and all components of the diagram must be supported by data to be tested appropriately, such that often a compromise between complexity and data availability is necessary. SEM works as a system of multivariate correlations so continuous data for each descriptor, and the responses is essential. Although categorical data can technically be accommodated, they are generally dealt with through individual SEM versions for each data category separately.<\/p>\n<ul>\n<li><strong>Availability \/ URL:<\/strong> Example of application soon to be available on a github repository (tbc)<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p>[\/et_pb_text][\/et_pb_column][\/et_pb_row][et_pb_row _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221; theme_builder_area=&#8221;post_content&#8221;][et_pb_column type=&#8221;4_4&#8243; _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221; theme_builder_area=&#8221;post_content&#8221;][et_pb_text _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; text_font=&#8221;|700|||||||&#8221; header_2_font=&#8221;|700|||||||&#8221; header_3_font=&#8221;|700|||||||&#8221; global_colors_info=&#8221;{}&#8221; theme_builder_area=&#8221;post_content&#8221;]<\/p>\n<h3>Related Tools:<\/h3>\n<p>[\/et_pb_text][et_pb_code _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; custom_padding=&#8221;||5px|||&#8221; global_colors_info=&#8221;{}&#8221; theme_builder_area=&#8221;post_content&#8221;][\/et_pb_code][\/et_pb_column][\/et_pb_row][\/et_pb_section]<\/p>\n","protected":false},"excerpt":{"rendered":"<p>It is a tool that visually represents cause\u2013effect relationships in ecosystems using causal path diagrams, capturing direct, indirect, and feedback effects.<br \/>\nIt then quantifies and tests these relationships with Structural Equation Models (SEM) to identify the mechanisms driving ecosystem functioning and service provision.<\/p>\n","protected":false},"author":1,"featured_media":51,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"","_et_gb_content_width":"","footnotes":""},"categories":[38,71,78,87,91,97,59,102,54,107,51,116,120,98,108,92,117,88,37,127,72,79,70,43,55,60,133,41,44,113,109,99,93,61,73,77,62,74,45,110,50,90,94,53,63,95,64,58,96,65,66,86,106,129],"project_tag":[],"class_list":["post-963","project","type-project","status-publish","has-post-thumbnail","hentry","category-ecological","category-numerical-model","category-multivariate-statistical-analysis","category-biological","category-species-data","category-biogeochemical-data","category-sampling-measurements","category-human-pressures","category-researchers","category-visual-spatial","category-generating-understanding-data","category-measurements","category-relationships-interactions","category-environmental-data-variables","category-quantitative-analytical","category-abundance-biomass","category-statistics","category-physical","category-main-category","category-indicators","category-conceptual-model","category-statistical-analysis","category-modeling-approaches","category-ecosystem-functioning-biodiversity","category-practitioners","category-spatial-data","category-archipelago-sea","category-subtopic","category-environmental-risks-impacts","category-network-diagram","category-descriptive-interpretative","category-oceanographic-data","category-functional-traits-groups","category-online-databases","category-parametrized-model","category-statistical-methods","category-literature","category-statistical-model","category-ecosystem-services-management","category-predictive","category-purpose","category-societal-input","category-habitat-data","category-target-user","category-knowledge","category-biological-samples","category-surveys","category-data-type","category-ecosystem-processes","category-time-series-data","category-tool-type","category-input","category-output","category-location-tested"],"_links":{"self":[{"href":"https:\/\/marbefes.lifewatch.eu\/index.php\/wp-json\/wp\/v2\/project\/963","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/marbefes.lifewatch.eu\/index.php\/wp-json\/wp\/v2\/project"}],"about":[{"href":"https:\/\/marbefes.lifewatch.eu\/index.php\/wp-json\/wp\/v2\/types\/project"}],"author":[{"embeddable":true,"href":"https:\/\/marbefes.lifewatch.eu\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/marbefes.lifewatch.eu\/index.php\/wp-json\/wp\/v2\/comments?post=963"}],"version-history":[{"count":6,"href":"https:\/\/marbefes.lifewatch.eu\/index.php\/wp-json\/wp\/v2\/project\/963\/revisions"}],"predecessor-version":[{"id":1542,"href":"https:\/\/marbefes.lifewatch.eu\/index.php\/wp-json\/wp\/v2\/project\/963\/revisions\/1542"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/marbefes.lifewatch.eu\/index.php\/wp-json\/wp\/v2\/media\/51"}],"wp:attachment":[{"href":"https:\/\/marbefes.lifewatch.eu\/index.php\/wp-json\/wp\/v2\/media?parent=963"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/marbefes.lifewatch.eu\/index.php\/wp-json\/wp\/v2\/categories?post=963"},{"taxonomy":"project_tag","embeddable":true,"href":"https:\/\/marbefes.lifewatch.eu\/index.php\/wp-json\/wp\/v2\/project_tag?post=963"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}